Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015910977.1_cds_XP_016461035.1_54396
CDS Infomation

[gene=LOC107784418] [db_xref=GeneID:107784418] [protein=DNA-directed RNA polymerase 3, chloroplastic isoform X2] [protein_id=XP_016461035.1] [location=join(42503..42538,42785..42988,43089..43222,43543..43612,44158..44216,44373..44490,44767..44880,45287..45415,45504..45920,46457..46507,46621..46691,47030..47114,47250..47402,47850..47924,48128..48217,48631..48678,48772..48886,49704..49807,49889..49999)] [gbkey=CDS]
Sequence

ATGCTAGGAATCCTGCCAAAACCATTTCATTTTAACGTTAGGATTCATAATTTCTTGGAG
AAAACAAAGAAACTCCAGAAACATATGACTGGAGCTCAAAGTCAAGAAGATATGAGTAGG
GAGACAATGATTCTAAGGAAACGGGTCAAAAGCTTGATTAAAAGGAATCGAGTAGTTGAG
GTGAGAAAGCTGATGAAAAGTGAAGAGCCCGAGTCTTGGGGTCGGGACACACAGGCTAAG
TTAGGATGCCGGCTTTTAGAATTATTAACAGAAACAGCTTATGTGCAACCTCCAGTGGAT
CAGTCTGCTGATACTCCTCCTGATATTAGGCCTGCGTTCAGACACGTATTCAGAATTGCT
ACAAGAGATCCGGGGAAGAGCATTGTCAAGAAGTATGGTGTCATCGAATGTGATCCATTG
GTTGTTGCGGGAGTTGACAGAACAGTTAAACAGATGATGATTCCTTATGTGCCTATGTTG
GTGCCACCCAAAAAATGGAGAGGGTATGACAAAGGCGGATACTTATTCTTGCCCTCCTAT
TTGATGCGCACACATGGATCTAGGAGGCAACAAGATGCTGTAAGAAGTGTTCCCACGAAA
CAAATGCAGCAAGTTTATGAGGCCTTGGATACCTTAGGAAGCACTAAATGGAGAGTGAAT
AAAAGGATACTAAGTGTGGTTGAGAGTATTTGGGCTGGAGGCGGAAATATTGCTGGCCTA
GTGGATCGCAAAGATGTTCCGATACCAGAGTTGCACTCTGATGATATAATGGAAGTGAAA
AAGTGGAAATGGAGGGTGCGAAAATCAAAAAAAATCAACCAAGAGTTGCATTCCCAAAGA
TGTGACACAGAGCTCAAGCTTTCAGTTGCTCGGAAGTTGAAAGACGAGGAAGGATTTTAT
TATCCTCACAATCTTGATTTTCGAGGACGTGCATACCCTATGCATCCTCATTTGAATCAC
TTGAGCTCGGATCTATGTCGGGGAATCCTTGAATTTGCTGAAGGACGACCTCTAGGAAAG
TCAGGATTGCGTTGGCTGAAAATACATTTAGCAAGTCTTTATGCAGGGGGAATAGAGAAG
CTCTGCTACGATGCACGCCTTGCATTTGTAGAAAACCACATTGATGACATATTAGATTCA
GCAAACAATCCTCTAAATGGAAATCGATGGTGGTTAAATGCTGAGGATCCTTTTCAGTGC
TTAGCAGCTTGCATTAACCTATCAGAAGCTTTAAAAAGCTCGTCACCACATACTGTCTTT
TCCCATCTGCCTATTCATCAGGATGGTTCATGCAATGGCCTTCAACACTATGCAGCTCTG
GGAAGAGATAGTATGGAGGCAGCAGCAGTCAACTTAGTTGCTGGAGATAAACCAGCTGAT
GTTTATACTGAAATCGCTCTGAGGGTTGATCATATTATCAGAGGAGATAGTATCAAGGAC
CCTGCAACTGATCCTAATGCTTTACTAGCCAAACTCCTAATTGACCAGGTTGACAGGAAA
TTGGTGAAGCAGACAGTAATGACCTCAGTGTATGGTGTTACCTATGTCGGAGCACGTGAG
CAAATCAAAAGAAGATTGGAGGAGAAGGGTCTTATCGATGATGATAGGCTGCTGTTTACT
GCATCTTGCTATGCTGCCAAAGTGACATTAGCTGCTTTGGGGGAGTTATTTCAAGCGGCA
CGTGGCACAATGACTTGGCTCGGTGACTGTGCTAAGGTGATTGCTTCAGAAAATCAGCCA
GTGCGATGGACGACACCACTGGGGCTCCCTGTTGTGCAGCCTTACTTTAAAACTCAGCGG
CATGTTATAAGAACTTCTCTTCAAGTTTTGGCTTTGCAGCGTGAGGGTGACACAGTTGAG
GTCCGGAAACAGAGAACTGCTTTTCCTCCAAATTTTGTGCACTCACTGGATGGTTCACAT
ATGATGATGACCGCTGTTGCTTGTAGGGACGCTGGACTACAGTTTGCAGGGGTACATGAT
TCCTTCTGGACTCATGCATGTGATGTCGACCAGATGAACAGGATACTCCGCGAAAAGTTT
GTGGAGCTGTACAGTATGCCTATTCTTGAAGATTTGCTCGAAAGCTTCCAGAATTCATAT
CCAGCATTAACATTTCCCCCTCTACCAAAAAGAGGTGATTTTGATTTAGTGGAAGTTCTC
GAGTCGCCCTACTTCTTTAACTGA

Peptide Sequence

PEP ID

XP_016461035.1
PEP Infomation

PREDICTED: DNA-directed RNA polymerase 3, chloroplastic isoform X2 [Nicotiana tabacum]
Sequence

MLGILPKPFHFNVRIHNFLEKTKKLQKHMTGAQSQEDMSRETMILRKRVKSLIKRNRVVE
VRKLMKSEEPESWGRDTQAKLGCRLLELLTETAYVQPPVDQSADTPPDIRPAFRHVFRIA
TRDPGKSIVKKYGVIECDPLVVAGVDRTVKQMMIPYVPMLVPPKKWRGYDKGGYLFLPSY
LMRTHGSRRQQDAVRSVPTKQMQQVYEALDTLGSTKWRVNKRILSVVESIWAGGGNIAGL
VDRKDVPIPELHSDDIMEVKKWKWRVRKSKKINQELHSQRCDTELKLSVARKLKDEEGFY
YPHNLDFRGRAYPMHPHLNHLSSDLCRGILEFAEGRPLGKSGLRWLKIHLASLYAGGIEK
LCYDARLAFVENHIDDILDSANNPLNGNRWWLNAEDPFQCLAACINLSEALKSSSPHTVF
SHLPIHQDGSCNGLQHYAALGRDSMEAAAVNLVAGDKPADVYTEIALRVDHIIRGDSIKD
PATDPNALLAKLLIDQVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKGLIDDDRLLFT
ASCYAAKVTLAALGELFQAARGTMTWLGDCAKVIASENQPVRWTTPLGLPVVQPYFKTQR
HVIRTSLQVLALQREGDTVEVRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLQFAGVHD
SFWTHACDVDQMNRILREKFVELYSMPILEDLLESFQNSYPALTFPPLPKRGDFDLVEVL
ESPYFFN

Transcript Sequence

Gene sequence data has not been registered.